Mendes Research Group

Collaborators

We are very pleased to have a large number of ongoing collaborations which allow us to broaden our interests and capabilities. Please take some time to visit our friends web sites, they are all doing great work!

Active collaborators

• Ursula Kummer, University of Heidelberg on the COPASI project.
• Stefan Hoops, Biocomplexity Institute of Virginia Tech, on the COPASI project.
• Sven Sahle, University of Heidelberg on the COPASI project.
• Jürgen Pahle, University of Heidelberg on the COPASI project.
• Les Loew, University of Connecticut on Computational Cell Biology.
• Ann Cowan, University of Connecticut on Computational Cell Biology.
• Ion Moraru, University of Connecticut on Computational Cell Biology.
• Michael Blinov, University of Connecticut on Computational Cell Biology.
• Boris Slepchenko, University of Connecticut on Computational Cell Biology.
• Reinhard Laubenbacher, University of Florida, on mixed Candida albicans-bacterial biofilm formation.
• Anna Dongari-Bagtzoglou, Department of Oral Health Sciences, UConn Health, on mixed Candida albicans-bacterial biofilm formation.
• Sherli Koshy Chenthittayil, Touro University Nevada, on mixed Candida albicans-bacterial biofilm formation and chaos in dynamical systems.
• Douglas Kell, University of Liverpool, a long-time collaborator on many topics.
• Tom Bartnikas, Brown University, on iron metabolism.
• Rodrigo Mora-Rodríguez, University of Costa Rica, on reverse engineering gene regulation.
• The colleagues from the The Computational Modeling in Biology Network (combine), on standards in systems biology.

Past collaborators

• John McCarthy, University of Warwick, on the mechanism of mRNA translation and protein synthesis.
• José M. Argüello, Worcester Polytechnic Institute on copper homeostasis in Pseudomonas aeruginosa.
• Norman Paton, University of Manchester, on data and model management and standards (including the COPASI project).
• Sophia Ananiadou, University of Manchester, on text mining for systems biology.
• Karin Finberg, Yale School of Medicine, on iron metabolism.
• Julio Banga, (Bio)Process Engineering Group, Spanish Council for Scientific Research, Vigo, on parameter estimation.
• Christoph Steinbeck, at the European Bioinformatics Institute, on the ChEBI database.
• Nigel Scrutton, University of Manchester, on metabolic engineering and synthetic biology.
• Hans V. Westerhoff, University of Manchester, University of Amsterdam, and Free University of Amsterdam, on modeling biochemical systems
• Frank Torti and Suzi Torti, University of Connecticut Health Center, on systems biology of iron metabolism
• Edda Klipp, Humboldt University, Berlin, on large-scale metabolic modelling.
• Wolfram Liebermeister, Charité - Universitätsmedizin Berlin, on large-scale metabolic modelling.
• Nancy Rothwell, and David Brough, University of Manchester, on the systems biology of inflammation
• Vladimir Shulaev, Virginia Tech, on yeast systems biology and metabolomics.
• Stefan Hohman, Goetborg University, and a large network of European yeast researchers, on yeast systems biology
• Craig Nessler Texas A&M, on vitamin C biosynthesis in Arabidopsis.
• Argelia Lorence Arkansas State University, on vitamin C biosynthesis in Arabidopsis.
• Rick Dixon, University of North Texas, on Medicago truncatula systems biology.
• Lloyd Sumner, Samuel Roberts Noble Foundation, on Medicago truncatula systems biology.
• Tim Smith, Southeastern Oklahoma State University, on Medicago truncatula systems biology.
• Greg D. May, Samuel Roberts Noble Foundation, on Medicago truncatula systems biology.
• Grant R. Cramer on functional genomics of grapes.
• G. Rickey Welch, University of Cambridge, on metabolic channeling and oscillations
• Jacky Snoep, University of Stellenbosh, on metabolic control analysis and metabolic modelling.
• Ana Ponces Freire, University of Lisbon, on biochemistry of glyoxalases.