Mendes Research Group

Collaborators

We are very pleased to have a large number of ongoing collaborations which allow us to broaden our interests and capabilities. Please take some time to visit our friends web sites, they are all doing great work!

Active collaborators

• Ursula Kummer, University of Heidelberg on the COPASI project.
• Stefan Hoops, Biocomplexity Institute of Virginia Tech, on the COPASI project.
• Sven Sahle, University of Heidelberg on the COPASI project.
• Jürgen Pahle, University of Heidelberg on the COPASI project.
• Reinhard Laubenbacher, Center for Quantitative Medicine, UConn Health, on copper homeostasis in Pseudomonas aeruginosa, mixed Candida albicans-bacterial biofilm formation.
• Anna Dongari-Bagtzoglou, Department of Oral Health Sciences, UConn Health, on mixed Candida albicans-bacterial biofilm formation.
• José M. Argüello, Worcester Polytechnic Institute on copper homeostasis in Pseudomonas aeruginosa.
• Douglas Kell, University of Manchester, a long-time collaborator on many topics.
• John McCarthy, University of Warwick, on the mechanism of mRNA translation and protein synthesis.
• Karin Finberg, Yale School of Medicine, on iron metabolism.
• Tom Bartnikas, Brown University, on iron metabolism.
• Norman Paton, University of Manchester, on data and model management and standards (including the COPASI project).
• The colleagues from the The Computational Modeling in Biology Network (combine), on standards in systems biology.

Past collaborators

• Sophia Ananiadou, University of Manchester, on text mining for systems biology.
• Julio Banga, (Bio)Process Engineering Group, Spanish Council for Scientific Research, Vigo, on parameter estimation.
• Christoph Steinbeck, at the European Bioinformatics Institute, on the ChEBI database.
• Nigel Scrutton, University of Manchester, on metabolic engineering and synthetic biology.
• Hans V. Westerhoff, University of Manchester, University of Amsterdam, and Free University of Amsterdam, on modelling biochemical systems
• Frank Torti and Suzi Torti, University of Connecticut Health Center, on systems biology of iron metabolism
• Edda Klipp, Humboldt University, Berlin, on large-scale metabolic modelling.
• Wolfram Liebermeister, Charité - Universitätsmedizin Berlin, on large-scale metabolic modelling.
• Nancy Rothwell, and David Brough, University of Manchester, on the systems biology of inflammation
• Vladimir Shulaev, University of North Texas, on yeast systems biology and metabolomics.
• Stefan Hohman, Goetborg University, and a large network of European yeast researchers, on yeast systems biology
• Craig Nessler Texas A&M, on vitamin C biosynthesis in Arabidopsis.
• Argelia Lorence Arkansas State University, on vitamin C biosynthesis in Arabidopsis.
• Rick Dixon, University of North Texas, on Medicago truncatula systems biology.
• Lloyd Sumner, Samuel Roberts Novle Foundation, on Medicago truncatula systems biology.
• Tim Smith, Southeastern Oklahoma State University, on Medicago truncatula systems biology.
• Greg D. May, National Center for Genome Resources, on Medicago truncatula systems biology.
• Grant R. Cramer on functional genomics of grapes.
• G. Rickey Welch, University of Cambridge, on metabolic channeling and oscillations
• Jacky Snoep, University of Stellenbosh, on metabolic control analysis and metabolic modelling.
• Ana Ponces Freire, University of Lisbon, on biochemistry of glyoxalases.