Artificial Gene Network Series Web

Introduction

This series consists of 150 artificial gene networks. Each network consists of 50 genes. All networks are composed of genes with similar kinetics, the only difference between networks is the number of interactions per gene, which can be 1, 2 or 4. The networks have all a scale free topology. The file names indicate the total number of connections in each model by the first number after Web (the second number is just an ordinal number).

Each artificial gene network is like an in silico organism, which is used to carry out simulations of experiments. Data is available for:

null mutant experiments, where genes were deleted, one at a time, and steady-state gene expression levels are provided without noise. The tab delimited file includes the wild-type levels on the first row, followed by each of the null mutants (G1, G2, etc.) line by line. The columns represent the level of each gene (G1, G2, etc.).

Models are provided in Gepasi input files and SBML level 1 format; simulation results are supplied in tab delimited ASCII files. Models, data and network details are available in each network's summary page or within a single compressed file.

Network summary pages

1 connection per gene		2 connections per gene		4 connections per gene
Web50-001	null mutant data	Web100-001	null mutant data	Web200-001	null mutant data
Web50-002	null mutant data	Web100-002	null mutant data	Web200-002	null mutant data
Web50-003	null mutant data	Web100-003	null mutant data	Web200-003	null mutant data
Web50-004	null mutant data	Web100-004	null mutant data	Web200-004	null mutant data
Web50-005	null mutant data	Web100-005	null mutant data	Web200-005	null mutant data
Web50-006	null mutant data	Web100-006	null mutant data	Web200-006	null mutant data
Web50-007	null mutant data	Web100-007	null mutant data	Web200-007	null mutant data
Web50-008	null mutant data	Web100-008	null mutant data	Web200-008	null mutant data
Web50-009	null mutant data	Web100-009	null mutant data	Web200-009	null mutant data
Web50-010	null mutant data	Web100-010	null mutant data	Web200-010	null mutant data
Web50-011	null mutant data	Web100-011	null mutant data	Web200-011	null mutant data
Web50-012	null mutant data	Web100-012	null mutant data	Web200-012	null mutant data
Web50-013	null mutant data	Web100-013	null mutant data	Web200-013	null mutant data
Web50-014	null mutant data	Web100-014	null mutant data	Web200-014	null mutant data
Web50-015	null mutant data	Web100-015	null mutant data	Web200-015	null mutant data
Web50-016	null mutant data	Web100-016	null mutant data	Web200-016	null mutant data
Web50-017	null mutant data	Web100-017	null mutant data	Web200-017	null mutant data
Web50-018	null mutant data	Web100-018	null mutant data	Web200-018	null mutant data
Web50-019	null mutant data	Web100-019	null mutant data	Web200-019	null mutant data
Web50-020	null mutant data	Web100-020	null mutant data	Web200-020	null mutant data
Web50-021	null mutant data	Web100-021	null mutant data	Web200-021	null mutant data
Web50-022	null mutant data	Web100-022	null mutant data	Web200-022	null mutant data
Web50-023	null mutant data	Web100-023	null mutant data	Web200-023	null mutant data
Web50-024	null mutant data	Web100-024	null mutant data	Web200-024	null mutant data
Web50-025	null mutant data	Web100-025	null mutant data	Web200-025	null mutant data
Web50-026	null mutant data	Web100-026	null mutant data	Web200-026	null mutant data
Web50-027	null mutant data	Web100-027	null mutant data	Web200-027	null mutant data
Web50-028	null mutant data	Web100-028	null mutant data	Web200-028	null mutant data
Web50-029	null mutant data	Web100-029	null mutant data	Web200-029	null mutant data
Web50-030	null mutant data	Web100-030	null mutant data	Web200-030	null mutant data
Web50-031	null mutant data	Web100-031	null mutant data	Web200-031	null mutant data
Web50-032	null mutant data	Web100-032	null mutant data	Web200-032	null mutant data
Web50-033	null mutant data	Web100-033	null mutant data	Web200-033	null mutant data
Web50-034	null mutant data	Web100-034	null mutant data	Web200-034	null mutant data
Web50-035	null mutant data	Web100-035	null mutant data	Web200-035	null mutant data
Web50-036	null mutant data	Web100-036	null mutant data	Web200-036	null mutant data
Web50-037	null mutant data	Web100-037	null mutant data	Web200-037	null mutant data
Web50-038	null mutant data	Web100-038	null mutant data	Web200-038	null mutant data
Web50-039	null mutant data	Web100-039	null mutant data	Web200-039	null mutant data
Web50-040	null mutant data	Web100-040	null mutant data	Web200-040	null mutant data
Web50-041	null mutant data	Web100-041	null mutant data	Web200-041	null mutant data
Web50-042	null mutant data	Web100-042	null mutant data	Web200-042	null mutant data
Web50-043	null mutant data	Web100-043	null mutant data	Web200-043	null mutant data
Web50-044	null mutant data	Web100-044	null mutant data	Web200-044	null mutant data
Web50-045	null mutant data	Web100-045	null mutant data	Web200-045	null mutant data
Web50-046	null mutant data	Web100-046	null mutant data	Web200-046	null mutant data
Web50-047	null mutant data	Web100-047	null mutant data	Web200-047	null mutant data
Web50-048	null mutant data	Web100-048	null mutant data	Web200-048	null mutant data
Web50-049	null mutant data	Web100-049	null mutant data	Web200-049	null mutant data
Web50-050	null mutant data	Web100-050	null mutant data	Web200-050	null mutant data

Download

The complete series is available in one single file: AGN-Web.zip (13 Mb). This file contains all the model and data files, as well as all the HTML pages (including this one).