Biochemical Networks Modeling Group | Artificial Gene Networks Home

Artificial Gene Network Series Jumbo

Introduction

This series consists of 10 artificial gene networks. Each network consists of 1000 genes with a total of 1000 gene interactions (on average each gene has 1 modulator). All networks are composed of genes with similar kinetics, the only difference between networks is how the gene interactions are organized (i.e. which genes induce and repress which other genes). The networks belong to two major groups according to their topologies.

In this set we have not produced any data. However the models are still available in Gepasi and SBML level 1 formats. You can use these files to produce any kind of data needed. Note that the Gepasi files can also be loaded into COPASI, our new simulator. Models and network details are available in each network's summary page or within a single compressed file.

Network summary pages

Erdös-type		Small-world
JumboRND-001		JumboSF-001
JumboRND-002		JumboSF-002
JumboRND-003		JumboSF-003
JumboRND-004		JumboSF-004
JumboRND-005		JumboSF-005

Download

The complete series is available in one single file: AGN-Jumbo.zip (1.5 Mb). This file contains all the model and data files, as well as all the HTML pages (including this one).