Artificial Gene Network Series Century

Introduction

This series consists of 150 artificial gene networks. Each network consists of 100 genes with a total of 200 gene interactions (on average each gene has 2 modulators). All networks are composed of genes with similar kinetics, the only difference between networks is how the gene interactions are organized (i.e. which genes induce and repress which other genes). The networks belong to three major groups according to their topologies.

Each artificial gene network is like an in silico organism, which is used to carry out simulations of experiments. Data is available for:

null mutant experiments, where genes were deleted, one at a time, and steady-state gene expression levels are provided without noise. The tab delimited file includes the wild-type levels on the first row, followed by each of the null mutants (G1, G2, etc.) line by line. The columns represent the level of each gene (G1, G2, etc.).

Models are provided in Gepasi input files and SBML level 1 format; simulation results are supplied in tab delimited ASCII files. Models, data and network details are available in each network's summary page or within a single compressed file.

Network summary pages

Erdös-type		Scale-free		Small-world
CenturyRND-001	null mutant data	CenturySF-001	null mutant data	CenturySW-001	null mutant data
CenturyRND-002	null mutant data	CenturySF-002	null mutant data	CenturySW-002	null mutant data
CenturyRND-003	null mutant data	CenturySF-003	null mutant data	CenturySW-003	null mutant data
CenturyRND-004	null mutant data	CenturySF-004	null mutant data	CenturySW-004	null mutant data
CenturyRND-005	null mutant data	CenturySF-005	null mutant data	CenturySW-005	null mutant data
CenturyRND-006	null mutant data	CenturySF-006	null mutant data	CenturySW-006	null mutant data
CenturyRND-007	null mutant data	CenturySF-007	null mutant data	CenturySW-007	null mutant data
CenturyRND-008	null mutant data	CenturySF-008	null mutant data	CenturySW-008	null mutant data
CenturyRND-009	null mutant data	CenturySF-009	null mutant data	CenturySW-009	null mutant data
CenturyRND-010	null mutant data	CenturySF-010	null mutant data	CenturySW-010	null mutant data
CenturyRND-011	null mutant data	CenturySF-011	null mutant data	CenturySW-011	null mutant data
CenturyRND-012	null mutant data	CenturySF-012	null mutant data	CenturySW-012	null mutant data
CenturyRND-013	null mutant data	CenturySF-013	null mutant data	CenturySW-013	null mutant data
CenturyRND-014	null mutant data	CenturySF-014	null mutant data	CenturySW-014	null mutant data
CenturyRND-015	null mutant data	CenturySF-015	null mutant data	CenturySW-015	null mutant data
CenturyRND-016	null mutant data	CenturySF-016	null mutant data	CenturySW-016	null mutant data
CenturyRND-017	null mutant data	CenturySF-017	null mutant data	CenturySW-017	null mutant data
CenturyRND-018	null mutant data	CenturySF-018	null mutant data	CenturySW-018	null mutant data
CenturyRND-019	null mutant data	CenturySF-019	null mutant data	CenturySW-019	null mutant data
CenturyRND-020	null mutant data	CenturySF-020	null mutant data	CenturySW-020	null mutant data
CenturyRND-021	null mutant data	CenturySF-021	null mutant data	CenturySW-021	null mutant data
CenturyRND-022	null mutant data	CenturySF-022	null mutant data	CenturySW-022	null mutant data
CenturyRND-023	null mutant data	CenturySF-023	null mutant data	CenturySW-023	null mutant data
CenturyRND-024	null mutant data	CenturySF-024	null mutant data	CenturySW-024	null mutant data
CenturyRND-025	null mutant data	CenturySF-025	null mutant data	CenturySW-025	null mutant data
CenturyRND-026	null mutant data	CenturySF-026	null mutant data	CenturySW-026	null mutant data
CenturyRND-027	null mutant data	CenturySF-027	null mutant data	CenturySW-027	null mutant data
CenturyRND-028	null mutant data	CenturySF-028	null mutant data	CenturySW-028	null mutant data
CenturyRND-029	null mutant data	CenturySF-029	null mutant data	CenturySW-029	null mutant data
CenturyRND-030	null mutant data	CenturySF-030	null mutant data	CenturySW-030	null mutant data
CenturyRND-031	null mutant data	CenturySF-031	null mutant data	CenturySW-031	null mutant data
CenturyRND-032	null mutant data	CenturySF-032	null mutant data	CenturySW-032	null mutant data
CenturyRND-033	null mutant data	CenturySF-033	null mutant data	CenturySW-033	null mutant data
CenturyRND-034	null mutant data	CenturySF-034	null mutant data	CenturySW-034	null mutant data
CenturyRND-035	null mutant data	CenturySF-035	null mutant data	CenturySW-035	null mutant data
CenturyRND-036	null mutant data	CenturySF-036	null mutant data	CenturySW-036	null mutant data
CenturyRND-037	null mutant data	CenturySF-037	null mutant data	CenturySW-037	null mutant data
CenturyRND-038	null mutant data	CenturySF-038	null mutant data	CenturySW-038	null mutant data
CenturyRND-039	null mutant data	CenturySF-039	null mutant data	CenturySW-039	null mutant data
CenturyRND-040	null mutant data	CenturySF-040	null mutant data	CenturySW-040	null mutant data
CenturyRND-041	null mutant data	CenturySF-041	null mutant data	CenturySW-041	null mutant data
CenturyRND-042	null mutant data	CenturySF-042	null mutant data	CenturySW-042	null mutant data
CenturyRND-043	null mutant data	CenturySF-043	null mutant data	CenturySW-043	null mutant data
CenturyRND-044	null mutant data	CenturySF-044	null mutant data	CenturySW-044	null mutant data
CenturyRND-045	null mutant data	CenturySF-045	null mutant data	CenturySW-045	null mutant data
CenturyRND-046	null mutant data	CenturySF-046	null mutant data	CenturySW-046	null mutant data
CenturyRND-047	null mutant data	CenturySF-047	null mutant data	CenturySW-047	null mutant data
CenturyRND-048	null mutant data	CenturySF-048	null mutant data	CenturySW-048	null mutant data
CenturyRND-049	null mutant data	CenturySF-049	null mutant data	CenturySW-049	null mutant data
CenturyRND-050	null mutant data	CenturySF-050	null mutant data	CenturySW-050	null mutant data

Download

The complete series is available in one single file: AGN-Century.zip (62 Mb). This file contains all the model and data files, as well as all the HTML pages (including this one).